Skip to contents

All functions

ANCCR()
Train the ANCCR model
augment(<CalmrDesign>) .anccrize_design() mapping(<CalmrDesign>) trials(<CalmrDesign>)
Augment CalmrDesign
CalmrDesign
S4 class for Calmr designs
show(<CalmrExperiment>) design(<CalmrExperiment>) arguments(<CalmrExperiment>) c(<CalmrExperiment>) parameters(<CalmrExperiment>) `parameters<-`(<CalmrExperiment>) experience(<CalmrExperiment>) `experience<-`(<CalmrExperiment>) results(<CalmrExperiment>) raw_results(<CalmrExperiment>) length(<CalmrExperiment>) parse(<CalmrExperiment>) aggregate(<CalmrExperiment>)
CalmrExperiment methods
CalmrExperiment-class
S4 class for calmr experiments.
show(<CalmrFit>) predict(<CalmrFit>) NLL(<CalmrFit>) AIC(<CalmrFit>) BIC(<CalmrFit>)
CalmrFit Methods
CalmrFit
S4 class for Calmr Fit
CalmrModel-class
S4 class for Calmr Models
show(<CalmrRSA>)
CalmrRSA Methods
CalmrRSA
S4 class for Calmr representational similarity analysis
show(<CalmrResult>) c(<CalmrExperimentResult>)
Methods for CalmrResult
CalmrResult-class
S4 class for Calmr Results
HD2022()
Train the HD2022 model
HDI2020()
Train the HDI2020 model
MAC1975()
Train the MAC1975 model
PKH1982()
Train the PKH1982 model
RAND()
Train the RAND model
rsa(<CalmrExperiment>) test(<CalmrRSA>) plot(<CalmrRSA>)
Perform representational similarity analysis on CalmrExperiment
RW1972()
Train the RW1972 model
SM2007()
Train the SM2007 model
app()
Run the calmr shiny application
calmr_model_plot()
Create a plot with calmr data
compare_models()
Run models given a set of parameters
fit_model()
Fit model to data
get_design()
Get basic designs
get_exp_opts()
Get options for an experiment
get_parameters()
Get model parameters
calmr_model_graph() graph(<CalmrExperiment>)
Create a graph with calmr data
make_experiment()
Make CalmrExperiment
supported_models() supported_optimizers() supported_families() supported_plots() get_model() model_outputs()
Miscellaneous information functions
get_optimizer_opts()
Get optimizer options
parse_design()
Parse design data.frame
patch_graphs()
Patch Calmr graphs
patch_plots()
Patch Calmr plots
pati
Rat responses from Patittucci et al. 2016
phase_parser()
Parses a phase string
plot()
Plot CalmrExperiment
run_experiment()
Run experiment
set_reward_parameters()
Set reward parameters for ANCCR model