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All functions

CalmrDesign-class
S4 class for calmr designs
show(<CalmrDesign>) mapping(<CalmrDesign>) trials(<CalmrDesign>)
CalmrDesign methods
show(<CalmrExperiment>) design(<CalmrExperiment>) trials(<CalmrExperiment>) parameters(<CalmrExperiment>) `parameters<-`(<CalmrExperiment>) experiences(<CalmrExperiment>) `experiences<-`(<CalmrExperiment>) results(<CalmrExperiment>) raw_results(<CalmrExperiment>) parsed_results(<CalmrExperiment>) length(<CalmrExperiment>) parse(<CalmrExperiment>) aggregate(<CalmrExperiment>) plot(<CalmrExperiment>) graph(<CalmrExperiment>) timings(<CalmrExperiment>) `timings<-`(<CalmrExperiment>) filter(<CalmrExperiment>)
CalmrExperiment methods
CalmrExperiment-class
S4 class for calmr experiments.
CalmrFit-class
S4 class for calmr Fit
show(<CalmrFit>) predict(<CalmrFit>) NLL(<CalmrFit>) AIC(<CalmrFit>) BIC(<CalmrFit>)
CalmrFit methods
CalmrModel-class
S4 class for calmr Models
run(<CalmrModel>) parameters(<CalmrModel>) `parameters<-`(<CalmrModel>) raw_results(<CalmrModel>) parsed_results(<CalmrModel>) show(<CalmrModel>) parse(<CalmrModel>) plot(<CalmrModel>) graph(<CalmrModel>) run(<ANCCR>) run(<HDI2020>) run(<HD2022>) run(<MAC1975>) run(<PKH1982>) run(<RAND>) run(<RW1972>) run(<SM2007>) run(<TD>)
CalmrModel methods
CalmrRSA-class
S4 class for calmr representational similarity analysis
show(<CalmrRSA>) test(<CalmrRSA>) plot(<CalmrRSA>)
CalmrRSA methods
calmr_model_graph() patch_graphs() get_graph_opts()
Create a graph with calmr data
calmr_verbosity()
Set verbosity options for calmr
compare_models()
Run models given a set of parameters
fit_model()
Fit model to data
get_design()
Get basic designs
get_optimizer_opts()
Get optimizer options
get_parameters()
Get model parameters
get_timings()
Get timing design parameters
make_experiment()
Make CalmrExperiment
supported_models() add_model() supported_timed_models() supported_optimizers() supported_families() supported_plots() get_model() model_parameters() model_outputs()
Model information functions
parse_design()
Parse design data.frame
pati
Rat responses from Patittucci et al. 2016
phase_parser()
Parses a phase string
plot_targeted_tbins() plot_tbins() plot_targeted_trials() plot_trials() plot_targeted_typed_trials() plot_targeted_complex_trials()
General plotting functions
plot_common_scale() get_plot_opts() patch_plots()
General plotting options
rsa()
Perform representational similarity analysis
run_experiment()
Run experiment
set_calmr_palette()
Get/set the colour/fill palette for plots
set_reward_parameters()
Set reward parameters for ANCCR model